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Fungal colonization and infections in patients with COVID-19 in intensive care units: A real-life experience at a tertiary-care hospital - 29/11/22

Doi : 10.1016/j.resmer.2022.100937 
Vildan Avkan-Oğuz a, , Muammer Çelİk a, Oya Özlem Eren-Kutsoylu a, Arzu Nazli a, Yasin Levent Uğur b, Abdullah Taylan c, Begüm Ergan d, Çağlar Irmak a, Esra Duğral e, A. Aydan Özkütük f
a Dokuz Eylul University Faculty of Medicine, Department of Infectious Diseases and Clinical Microbiology, Turkey 
b Dokuz Eylul University Faculty of Medicine, Department of Anesthesiology and Reanimation, Turkey 
c Dokuz Eylul University Faculty of Medicine, Department of Radiology, Turkey 
d Dokuz Eylul University Faculty of Medicine, Department of Pulmonary Diseases, Turkey 
e Dokuz Eylul University Faculty of Medicine, Health Sciences Institute / Deputy Chief Physician, Turkey 
f Dokuz Eylul University Faculty of Medicine, Department of Medical Microbiology, Turkey 

Corresponding author at: Dokuz Eylul University Faculty of Medicine, Department of Infectious Diseases and Clinical Microbiology, 35340 Inciralti, Izmir, Turkey.Dokuz Eylul University Faculty of Medicine, Department of Infectious Diseases and Clinical Microbiology35340 InciraltiIzmirTurkey

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Abstract

Purpose

To evaluate the management of patients with COVID-19 in the intensive care units (ICUs) with fungal infection/colonization and to highlight diagnostic problems in these patients.

Methods

We included all patients with a COVID-19 diagnosis who were aged ≥18 years and followed in the ICU for the first 8 months. Patient data were obtained from medical records. We compared the risk factors, laboratory data, and outcomes of patients with fungal infection/colonization.

Results

A total of 118 patients (81 men and 37 women) were included. The mean age was 70.3 ± 14.8 (35–94) years. Of the patients, 79 (66.9%) patients were ≥65 years old. Fungal infection/colonization was detected in 39 (33.1%) patients. Fungi were isolated from 34 (28.8%) patients. Ten fungal species were isolated from 51 samples (the most common being Candida albicans). Three patients (2.5%) had proven candidemia. We observed two (1.7%) possible cases of COVID-19-associated pulmonary aspergillosis (CAPA). Eighteen patients (15.3%) underwent antifungal therapy. The risk of fungal infection/colonization increased as the duration of invasive mechanical ventilation increased. The fatality rate was 61.9% and increased with age and the use of mechanical ventilation. The fatality rate was 4.2-times-higher and the use of mechanical ventilation was 35.9-times-higher in the patients aged ≥65 years than in the patients aged <65 years. No relationship was found between fungal colonization/infection, antifungal treatment, and the fatality rate.

Conclusion

During the pandemic, approximately one-third of the patients in ICUs exhibited fungal infection/colonization. Candida albicans was the most common species of fungal infection as in the pre-pandemic area. Because of the cross-contamination risk, we did not performed diagnostic bronchoscopy and control thorax computed tomography during the ICU stay, and our patients mainly received empirical antifungal therapy.

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Keywords : COVID-19, Fungal infection, Fungal colonization, Intensive care unit, Candida albicans, COVID-19-associated pulmonary aspergillosis


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