Small-molecule screening of ribonuclease L binders for RNA degradation - 10/09/22
Abstract |
Small molecules targeting the ubiquitous latent ribonuclease (RNase L), which has limited sequence specificity toward single-stranded RNA substrates, hold great potential to be developed as broad-spectrum antiviral drugs by modulating the RNase L-mediated innate immune responses. The recent development of proximity-inducing bifunctional molecules, as described in the strategy of ribonuclease targeting chimeras, demonstrated that small-molecule RNase L activators can function as the essential RNase L-recruiting component to design bifunctional molecules for targeted RNA degradation. However, only a single screening study on small-molecule RNase L activators with poor potency has been reported to date. Herein, we established a FRET assay and conducted a screening of 240,000 small molecules to identify new RNase L activators with improved potency. The extremely low hit rate of less than 0.03% demonstrated the challenging nature of RNase L activation by small molecules available from current screening collections. A few hit compounds induced enhanced thermal stability of RNase L upon binding, although validation assays did not lead to the identification of compounds with significantly improved RNase L activating potency. The sulfonamide compound 17 induced a thermal shift of ~ 0.9 °C upon binding to RNase L, induced significant apoptosis in cancer cells, and showed single-digit micromolar inhibitory activity against cancer cell proliferation. This study paves the way for future structural optimization for the development of small-molecule RNase L binders.
Le texte complet de cet article est disponible en PDF.Graphical Abstract |
Highlights |
• | Established a highly optimized assay for small-molecule RNase L activator screening. |
• | Identified small molecules that induced RNase L thermal stability upon binding. |
• | Compound 17 induced apoptosis and inhibited proliferation of cancer cells. |
• | Demonstrated the need of screening molecules covering unconventional chemical space. |
Abbreviations : 2’-5’A, BHQ, FAM, IBQ, nanoDSF, FRET, OAS, PAGE, PAINS, RNase L, ssRNA
Keywords : Small molecules, Binders, Innate immune response, Ribonuclease, RNA degradation
Plan
Vol 154
Article 113589- octobre 2022 Retour au numéroBienvenue sur EM-consulte, la référence des professionnels de santé.
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