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Prevalence of bacteriologically confirmed pulmonary tuberculosis in South Africa, 2017–19: a multistage, cluster-based, cross-sectional survey - 21/07/22

Doi : 10.1016/S1473-3099(22)00149-9 
Sizulu Moyo, PhD a, b, , , Farzana Ismail, MMed c, d, , Martie Van der Walt, PhD e, , Nazir Ismail, FCPath f, Nkateko Mkhondo, MPH g, Sicelo Dlamini, MPH h, Thuli Mthiyane, PhD e, Jeremiah Chikovore, PhD a, Olanrewaju Oladimeji, PhD a, David Mametja, MPH i, Phaleng Maribe, BPhil e, Ishen Seocharan, BTech e, Phumlani Ximiya, BA h, Irwin Law, MBBS f, Marina Tadolini, MD j, k, Khangelani Zuma, PhD a, Samuel Manda, PhD e, Charalambos Sismanidis, PhD f, Yogan Pillay, PhD l, Lindiwe Mvusi, MBChB h
a Human Sciences Research Council, Cape Town, South Africa 
b School of Public Health and Family Medicine, University of Cape Town, Cape Town, South Africa 
c Centre for Tuberculosis, National Institute for Communicable Diseases, Johannesburg, South Africa 
d Department of Medical Microbiology, University of Pretoria, Pretoria, South Africa 
e South African Medical Research Council, Cape Town, South Africa 
f Global Tuberculosis Programme, World Health Organization, Geneva, Switzerland 
g Tuberculosis Programme, World Health Organization, Pretoria, South Africa 
h National Department of Health, Johannesburg, South Africa 
i Health Professions Council of South Africa, Pretoria, South Africa 
j Infectious Diseases Unit, IRCCS Azienda Ospedaliero-Universitaria di Bologna, Bologna, Italy 
k Department of Medical and Surgical Sciences, Alma Mater Studiorum University of Bologna, Bologna, Italy 
l Clinton Health Access Initiative, Pretoria, South Africa 

* Correspondence to: Dr Sizulu Moyo, Human Sciences Research Council, Cape Town 8000, South Africa Human Sciences Research Council Cape Town 8000 South Africa

Summary

Background

Tuberculosis remains an important clinical and public health issue in South Africa, which has one of the highest tuberculosis burdens in the world. We aimed to estimate the burden of bacteriologically confirmed pulmonary tuberculosis among people aged 15 years or older in South Africa.

Methods

This multistage, cluster-based, cross-sectional survey included eligible residents (age ≥15 years, who had slept in a house for ≥10 nights in the preceding 2 weeks) in 110 clusters nationally (cluster size of 500 people; selected by probability proportional-to-population size sampling). Participants completed face-to-face symptom questionnaires (for cough, weight loss, fever, and night sweats) and manually read digital chest X-ray screening. Screening was recorded as positive if participants had at least one symptom or an abnormal chest X-ray suggestive of tuberculosis, or a combination thereof. Sputum samples from participants who were screen-positive were tested by the Xpert MTB/RIF Ultra assay (first sample) and Mycobacteria Growth Indicator Tube culture (second sample), with optional HIV testing. Participants with a positive Mycobacterium tuberculosis complex culture were considered positive for bacteriologically confirmed pulmonary tuberculosis; when culture was not positive, participants with a positive Xpert MTB/RIF Ultra result with an abnormal chest X-ray suggestive of active tuberculosis and without current or previous tuberculosis were considered positive for bacteriologically confirmed pulmonary tuberculosis.

Findings

Between Aug 15, 2017, and July 28, 2019, 68 771 people were enumerated from 110 clusters, with 53 250 eligible to participate in the survey, of whom 35 191 (66·1%) participated. 9066 (25·8%) of 35 191 participants were screen-positive and 234 (0·7%) were identified as having bacteriologically confirmed pulmonary tuberculosis. Overall, the estimated prevalence of bacteriologically confirmed pulmonary tuberculosis was 852 cases (95% CI 679–1026) per 100 000 population; the prevalence was highest in people aged 35–44 years (1107 cases [95% CI 703–1511] per 100 000 population) and those aged 65 years or older (1104 cases [680–1528] per 100 000 population). The estimated prevalence was approximately 1·6 times higher in men than in women (1094 cases [95% CI 835–1352] per 100 000 population vs 675 cases [494–855] per 100 000 population). 135 (57·7%) of 234 participants with tuberculosis screened positive by chest X-ray only, 16 (6·8%) by symptoms only, and 82 (35·9%) by both. 55 (28·8%) of 191 participants with tuberculosis with known HIV status were HIV-positive.

Interpretation

Pulmonary tuberculosis prevalence in this survey was high, especially in men. Despite the ongoing burden of HIV, many participants with tuberculosis in this survey did not have HIV. As more than half of the participants with tuberculosis had an abnormal chest X-ray without symptoms, prioritising chest X-ray screening could substantially increase case finding.

Funding

Global Fund, Bill & Melinda Gates Foundation, USAID.

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